Selected Publications

1. Kim J*, Yuan Y*, Agaronayan K, Zhao A, Wang VD, Gupta G, Essayas H, Kaminski A, McGovern J, Yu S, Woo S, Lee CJ, Saleh T, Hu B, Sun Y, Ishikawa G, Bain W, Evankovich J, Herzog EL, Dela Cruz CS, Ryu C, Sharma L. Damage sensing through TLR9 Promotes Viral Clearance and Recovery During Influenza Infection. bioRxiv (2024), https://doi.org/10.1101/2024.03.04.583378, (* co-first author)

2. Yuan Y. Clinical translation of engineered pulmonary vascular models. Engineering Translational Models of Lung Homeostasis and Disease. 2023, 10.1007/978-3-031-26625-6

3. Leiby KL, Yuan Y, Ng R, Raredon MSB, Adams TS, Baevova P, Greaney AM, Hirschi K, Campbell SG, Kaminski N, Herzog EL, Niklason LE. In vitro engineering of the lung alveolus. npj Regenerative Medicine. (2023) 8:22 ; https://doi.org/10.1038/s41536-023-00295-2

4. Yuan Y, Leiby KL, Greaney AM, Raredon MBS, Qian H, Schupp JC, Engler AJ, Baevova P, Adams TS, Kural MH, Wang J, Kural M, Wang J, Obata T, Yoder MC, Kaminski N, Niklason LE. A pulmonary vascular model from endothelialized whole organ scaffolds. Front. Bioeng. Biotechnol.  2021 Nov 19;9:760309. doi: 10.3389/fbioe.2021.760309. eCollection 2021.

5. Schupp JC, Adams TS, Raredon MSB, Yuan Y, Omote N, Poli S, Chioccioli M, Rose KA, Manning EP, Sauler M, Deluliis G, Ahangari F, Neumark N, Habermann AC, Gutierrez AJ, Bui LT, Lafyatis R, Pierce RW, Meyer KB, Nawijn MC, Teichmann SA, Banovich N, Kropski JA, Niklason LE, Pe’er D, Yan X, Homer R, Rosas IO, Kaminski N. Integrated single cell atlas of endothelial cells for the human lung. Circulation. 2021 May 25. doi: 10.1161/CIRCULATIONAHA.120.052318.

6. Luo J*, Shi X*, Lin Y*, Yuan Y, Kural MH, Anderson CW, Ellis MW, Riaz M, Niklason LE, Qyang Y. Efficient differentiation of human induced pluripotent stem cells into endothelial cells under xenogeneic-free conditions for vascular tissue engineering. Acta Biomater, 2020 Nov 6;S1742-7061(20)30650-4. doi: 10.1016/j.actbio.2020.11.007. (* co-first author)

7. Yuan Y, Khan S, Stewart DJ, Courtman DW. Engineering blood outgrowth endothelial cells to optimize endothelial nitric oxide synthase and extracellular matrix production for coating of blood contacting surfaces. Acta Biomater. 2020 Apr 14; doi: 10.1016/j.actbio.2020.04.016. [Epub ahead of print] PubMed PMID: 32302726.

8. Greaney AM, Adams TS, Brickman Raredon MS, Gubbins E, Schupp JC, Engler AJ, Ghaedi M, Yuan Y, Kaminski N, Niklason LE. Platform effects on regeneration by pulmonary basal cells as evaluated by single-cell RNA sequencing. Cell Rep. 2020 Mar 24;30(12):4250-4265.e6. doi: 10.1016/j.celrep.2020.03.004. PubMed PMID: 32209482.

9. Yuan Y, Engler AJ, Raredon MS, Le A, Baevova P, Yoder MC, Niklason LE. Epac agonist improves barrier function in iPSC-derived endothelial colony forming cells for whole organ tissue engineering. Biomaterials. 2019 Apr;200:25-34. doi: 10.1016/j.biomaterials.2019.02.005. Epub 2019 Feb 7.

10. Yuan Y, Altalhi WA, Ng JJ, Stewart DJ, Courtman DW. Derivation of human peripheral blood derived endothelial progenitor cells for biomaterial application: the role of osteopontin surface modification and eNOS transfection. Biomaterials, 2013 Jun 27. pii: S0142-9612(13)00677-7. doi: 10.1016/j.biomaterials.2013.06.003.

11. Yuan Y, Hunter C, Kallos MS, Sen A. Improved expansion of human bone marrow-derived mesenchymal stem cells in microcarrier-based suspension culture. J Tissue Eng Regen Med. 2014 Mar; 8(3):210-25. 

 Complete list of my publications on PubMed:

https://www.ncbi.nlm.nih.gov/myncbi/1Tyeuhm8rHSgcJ/bibliography/public/?sortby=pubDate&sdirection=descending